Constants¶
Constants of diffupy.
- diffupy.constants.DEFAULT_DIFFUPY_DIR = '/home/docs/.diffupy'¶
Default DiffuPy directory
- diffupy.constants.OUTPUT = '/home/docs/.diffupy/output'¶
Default DiffuPy output directory
- diffupy.constants.EMOJI = '🌐'¶
Available diffusion methods
- diffupy.constants.RAW = 'raw'¶
raw
- diffupy.constants.ML = 'ml'¶
ml
- diffupy.constants.GM = 'gm'¶
gm
- diffupy.constants.MC = 'mc'¶
mc
- diffupy.constants.Z = 'z'¶
z
- diffupy.constants.BER_S = 'ber_s'¶
ber_s
- diffupy.constants.BER_P = 'ber_p'¶
ber p
- diffupy.constants.METHODS = {'ber_p', 'ber_s', 'gm', 'mc', 'ml', 'raw', 'z'}¶
Available formats
- diffupy.constants.CSV = 'csv'¶
csv
- diffupy.constants.XLS = 'xls'¶
xml
- diffupy.constants.XLSX = 'xlsx'¶
xmls
- diffupy.constants.TSV = 'tsv'¶
tsv
- diffupy.constants.GRAPHML = 'graphml'¶
graphML
- diffupy.constants.BEL = 'bel'¶
bel
- diffupy.constants.JSON = 'json'¶
node link json
- diffupy.constants.PICKLE = 'pickle'¶
pickle
- diffupy.constants.GML = 'gml'¶
gml
- diffupy.constants.EDGE_LIST = '.lst'¶
edge list
- diffupy.constants.GRAPH_FORMATS = ('csv', 'tsv', 'graphml', 'bel', 'json', 'pickle', 'gml')¶
Available graph formats
- diffupy.constants.KERNEL_FORMATS = ('csv', 'tsv', 'json', 'pickle')¶
Available kernel formats
- diffupy.constants.FORMAT_SEPARATOR_MAPPING = {'csv': ',', 'tsv': '\t'}¶
Optional parameters
- diffupy.constants.THRESHOLD = 'threshold'¶
Expression value threshold
- diffupy.constants.ABSOLUTE_VALUE_EXP = 'absolute_value'¶
Acceptable column names of user submitted network
- diffupy.constants.SOURCE = 'Source'¶
Column name for source node
- diffupy.constants.TARGET = 'Target'¶
Column name for target node
- diffupy.constants.RELATION = 'Relation '¶
Dataset column names
- diffupy.constants.NODE = 'Node'¶
Node name
- diffupy.constants.NODE_TYPE = 'NodeType'¶
Node type
- diffupy.constants.SCORE = 'Score'¶
Unspecified score type
- diffupy.constants.LOG_FC = 'LogFC'¶
Log2 fold change (logFC)
- diffupy.constants.P_VALUE = 'p-value'¶
Statistical significance (p-value)